Transcript 642 | MetamORF

Transcript

ID CARD

MetamORF ID

642

ENSMUST00000133996

Name

Ugcg-203

Strand

Biotype

processed_transcript

Start-end positions

59189558-59212203

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:22234

Aliases

AU043821,
C80537, ENSMUSG00000028381, Epcs21,
GlcT-1, MGI:1332243, NCBI:22234,
OFF:Ugcg, Ugcg, Ugcgl

Chr 4

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907	60	TTG ...	LMY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
1379687	57	TTG ...	LET ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
163442	177	CTG ...	LKG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
166402	78	GTG ...	VAD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
152038	51	TTG ...	LLG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
166242	126	CTG ...	LDY ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
147652	111	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
153757	75	ATG ...	MMI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
849	39	TTG ...	LEN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
162442	186	CTG ...	LKP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
157469	81	GTG ...	VDP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, R1E, Spleen_B_cell
147628	102	ATG ...	MKY ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Spleen_B_cell
149354	45	GTG ...	VVL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, v6-5
159805	66	TTG ...	LFG ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Neutrophil, v6-5
147471	96	CTG ...	LLD ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Neutrophil, R1E
147687	72	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
153329	87	CTG ...	LAQ ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, R1E, v6-5
160531	33	CTG ...	LMH ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Spleen_B_cell, v6-5
1226824	114	ATT ...	ISC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
148462	93	CTG ...	LDL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
163288	168	GTG ...	VDP ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
155279	87	GTG ...	VYK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
161114	54	GTG ...	VLF ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Spleen_B_cell, v6-5
147151	99	CTG ...	LKP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, R1E, Spleen_B_cell
165174	144	TTG ...	LET ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
160040	39	CTG ...	LWL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, Spleen_B_cell, v6-5
641	57	ATG ...	MYV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
153799	90	CTG ...	LKG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
148025	42	GTG ...	VLW ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, v6-5

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