Transcript 63718 | MetamORF

Transcript

ID CARD

MetamORF ID

63718

ENSMUST00000045993

Name

Cops4-201

Strand

Biotype

protein_coding

Start-end positions

100518309-100547803

CDS Start-stop positions

100518477-100547437

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:26891

Aliases

AW208976,
Cops4, D5Ertd774e, ENSMUSG00000035297,
MGI:1349414, NCBI:26891, OFF:Cops4,
SGN4

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1061751	120	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
181954	33	CTG ...	LPC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
182995	75	CTG ...	LSW ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Spleen_B_cell, v6-5
1240515	63	AGG ...	REP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1062413	84	TTG ...	LAA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
64873	51	CTG ...	LEE ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Spleen_B_cell, Testis, v6-5
517295	123	GTG ...	VPA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell, v6-5
564769	72	TTG ...	LSI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
563443	36	TTG ...	LFP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
190169	84	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
567980	30	ATG ...	MGL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
562617	54	TTG ...	LQG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1663135	72	ATG ...	MQP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1236367	42	ATC ...	ISD ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
566066	78	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1240772	51	AAG ...	KPC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
63717	60	GTG ...	VAE ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Spleen_B_cell, Testis, v6-5
185782	60	ATG ...	MQP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
175884	60	CTG ...	LEK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
519540	45	TTG ...	LRP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
1313214	75	CTG ...	LEK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
565402	60	ATG ...	MGQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
175539	96	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF

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