Transcript 635220

Transcript

ID CARD

MetamORF ID

635220

ENSMUST00000123343

Name

Pir-202

Strand

Biotype

processed_transcript

Start-end positions

164269573-164309777

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:69656

Aliases

2310042L19Rik,
ENSMUSG00000031379, MGI:1916906, NCBI:69656,
OFF:Pir, Pir, Pirnl

Chr X

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
927094	90	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
7164	36	GTG ...	VDD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1120679	150	TTG ...	LRR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, v6-5
1391662	129	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
1117996	33	ATG ...	MKT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
635253	156	GTG ...	VNL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, R1E, v6-5
1836402	108	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1276843	270	CTG ...	LWV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1335277	111	TTG ...	LKN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1118516	30	TTG ...	LLC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1118358	63	GTG ...	VGE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1277014	168	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
635219	168	TTG ...	LQL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, R1E
1335334	102	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1276572	60	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
886206	54	ATG ...	MLR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
886357	51	CTG ...	LRC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
1277959	30	AAG ...	KTF ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1117542	84	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
630283	66	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1280581	57	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
635489	162	CTG ...	LWV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, R1E, v6-5
886394	75	CTG ...	LQD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver

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