Transcript 63180 | MetamORF

Transcript

ID CARD

MetamORF ID

63180

ENSMUST00000153936

Name

Wipi2-204

Strand

Biotype

retained_intron

Start-end positions

142629591-142662709

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:74781

Aliases

1110018O08Rik,
2510001I10Rik, ENSMUSG00000029578, MGI:1923831,
NCBI:74781, OFF:Wipi2, Wipi2

Chr 5

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
64083	72	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
63179	165	TTG ...	LFS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, Testis, v6-5
65097	150	TTG ...	LVA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
65260	108	CTG ...	LEE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Testis, v6-5
64696	69	GTG ...	VIR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Testis, v6-5
1662454	39	TTG ...	LER ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1088992	111	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
565281	87	CTG ...	LHC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14
1086775	114	CTG ...	LKV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1662025	48	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
64226	60	GTG ...	VFS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, Testis, v6-5
568255	75	ATG ...	MSA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
63786	174	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Testis, v6-5
567992	63	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
564739	81	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1575785	72	AGG ...	RRQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1237554	45	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
64740	33	CTG ...	LFE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Testis, v6-5
562987	87	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1664742	72	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF
170366	45	CTG ...	LRY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1236618	93	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
64879	147	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
184586	78	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1238955	177	ATT ...	IVE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
63852	114	GTG ...	VCL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1239959	39	ATG ...	MNA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1660489	102	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1234447	48	ATA ...	IPS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
181452	90	GTG ...	VSG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
562936	48	TTG ...	LCV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
64820	36	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
561650	114	CTG ...	LPD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1239295	105	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
65322	63	TTG ...	LVP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
562927	66	TTG ...	LWR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
63352	75	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1089146	114	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5

Export data