Transcript 62965 | MetamORF

Transcript

ID CARD

MetamORF ID

62965

ENSMUST00000140139

Name

Gnb2-207

Strand

Biotype

protein_coding

Start-end positions

137529138-137531952

CDS Start-stop positions

-137530751

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:14693

Aliases

ENSMUSG00000029713,
Gnb-2, Gnb2, MGI:95784,
NCBI:14693, OFF:Gnb2

Chr 5

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
188726	123	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain
190210	198	ATG ...	MYH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain
180546	66	GTG ...	VPC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
66831	135	CTG ...	LGT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Testis
66794	81	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, Testis
67445	144	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, Testis
178309	69	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
171688	51	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
187951	237	ATG ...	MGG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
172375	36	CTG ...	LWG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
63527	75	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Testis
187935	156	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
66939	168	ATG ...	MSG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, Testis
62964	33	CTG ...	LGW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Brain, Testis
171469	81	CTG ...	LGH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
186230	177	ATG ...	MHC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain

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