Transcript 628736

Transcript

ID CARD

MetamORF ID

628736

ENSMUST00000150433

Name

Sh3kbp1-213

Strand

Biotype

retained_intron

Start-end positions

159627541-159921085

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:58194

Aliases

1200007H22Rik,
1700125L08Rik, 5830464D22Rik, AI447724,
Cin85, ENSMUSG00000040990, IN85,
MGI:1889583, NCBI:58194, OFF:Sh3kbp1,
Ruk, Seta, Sh3kbp1

Chr X

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
630951	45	ATG ...	MYP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
630065	48	CTG ...	LKD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
7046	60	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
632051	75	CTG ...	LPQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
7392	45	CTG ...	LVG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
7085	42	GTG ...	VGR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
630911	36	TTG ...	LET ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
441120	36	ATG ...	MAD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
629602	69	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
629525	33	TTG ...	LIT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
633656	48	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
630728	78	GTG ...	VGR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
7244	45	GTG ...	VHC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
765272	45	CTG ...	LVG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
632778	48	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
632277	54	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
7034	48	CTG ...	LVH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
631464	81	ATG ...	MVG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
630833	36	GTG ...	VET ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
628969	90	GTG ...	VAF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
629186	42	GTG ...	VGG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell

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