Transcript 627 | MetamORF

Transcript

ID CARD

MetamORF ID

627

ENSMUST00000145523

Name

Epha2-203

Strand

Biotype

processed_transcript

Start-end positions

141308894-141310958

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:13836

Aliases

AW545284,
Eck, ENSMUSG00000006445, Epha2,
MGI:95278, Myk2, NCBI:13836,
OFF:Epha2, Sek-2, Sek2

Chr 4

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1888692	111	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1888325	108	GTG ...	VPI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1081215	141	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1888966	168	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
995	45	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Skin_tumor
1888731	63	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1888741	204	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1525	57	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Skin_tumor
1889417	165	GTG ...	VPY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1233743	162	ATG ...	MPW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1888319	180	GTG ...	VDH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
626	51	GTG ...	VPV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Skin_tumor
1232468	195	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1232452	126	GTG ...	VDG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
825962	72	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1233904	147	ATG ...	MGA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14

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