Transcript 62544 | MetamORF

Transcript

ID CARD

MetamORF ID

62544

ENSMUST00000141873

Name

Srp72-205

Strand

Biotype

retained_intron

Start-end positions

76984095-76995146

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:66661

Aliases

5730576P14Rik,
72kDa, AI132477, BC019196,
C77589, ENSMUSG00000036323, MGI:1333795,
NCBI:66661, OFF:Srp72, Srp72

Chr 5

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
564174	123	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
62543	84	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
569829	48	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1019790	135	TTG ...	LVT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1020437	132	GTG ...	VTM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
563999	99	CTG ...	LAI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
62744	36	GTG ...	VDP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
561034	51	ATG ...	MQK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
561908	60	CTG ...	LQG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
521453	84	TTG ...	LIR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
903668	51	AGG ...	RSG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
64645	78	GTG ...	VLI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
568828	54	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
565755	117	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
522386	90	TTG ...	LSL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
564494	54	CTG ...	LIN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
570561	81	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
63868	111	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
566640	60	TTG ...	LIV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
184599	54	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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