Transcript 62483 | MetamORF

Transcript

ID CARD

MetamORF ID

62483

ENSMUST00000048116

Name

Slc7a1-201

Strand

Biotype

protein_coding

Start-end positions

148327410-148399904

CDS Start-stop positions

148332440-148352435

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:11987

Aliases

4831426K01Rik,
AI447493, Atrc-1, Atrc1,
Cat1, ENSMUSG00000041313, mCAT-1,
MGI:88117, NCBI:11987, OFF:Slc7a1,
Rec-1, Rev-1, Slc7a1

Chr 5

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
828873	42	TTG ...	LGW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
62482	42	ATG ...	MSW ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
522161	165	GTG ...	VAV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
833886	225	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	CDS sORF	B_cell, Brain, R1E
183293	51	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
517201	63	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
520856	33	CTG ...	LRA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
523348	210	GTG ...	VAV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
518331	48	GTG ...	VPV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
516940	129	GTG ...	VLR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
180983	75	GTG ...	VGS ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Spleen_B_cell, v6-5
524172	177	CTG ...	LMK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, R1E, Spleen_B_cell
180287	36	GTG ...	VPV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
167223	60	TTG ...	LWP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
524270	216	CTG ...	LAV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Spleen_B_cell
524013	174	ATG ...	MKP ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
184167	30	GTG ...	VNH ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
833050	39	ATG ...	MTC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
521164	96	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
1234631	36	AGG ...	RAR ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
63492	51	GTG ...	VDS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Testis
520081	48	CTG ...	LQP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1237997	87	AAG ...	KRP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
830733	54	CTG ...	LTA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF
522647	42	GTG ...	VLH ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
831760	51	GTG ...	VPW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
520842	132	CTG ...	LMK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
1623	72	ATG ...	MPW ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
516451	159	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
523319	84	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
521210	51	TTG ...	LVP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
180027	33	CTG ...	LEP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
174680	63	CTG ...	LKM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
523502	243	CTG ...	LCD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
414568	60	GTG ...	VRG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, C2C12, Spleen_B_cell
520196	108	ATG ...	MGS ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
520499	39	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1240460	117	ATT ...	ISV ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
189113	138	GTG ...	VSC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
189457	150	TTG ...	LDS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
171351	48	TTG ...	LEE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
189425	171	GTG ...	VRE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
521328	129	ATG ...	MKP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Spleen_B_cell
524031	93	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
519427	93	GTG ...	VRK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, Spleen_B_cell
524346	87	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
190295	111	TTG ...	LAL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
518009	102	CTG ...	LQK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
524593	222	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF
524822	204	GTG ...	VGP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, R1E, Spleen_B_cell
832306	45	GTG ...	VQM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
519028	123	GTG ...	VHC ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell, v6-5
518763	63	CTG ...	LYQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
64016	93	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell, Testis
180732	57	ATG ...	MDY ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
523978	174	CTG ...	LMA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
187290	75	GTG ...	VFW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
831715	72	CTG ...	LAR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF
522975	141	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
516762	30	TTG ...	LAC ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
520515	33	CTG ...	LAA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
190214	81	CTG ...	LPV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
520537	75	CTG ...	LLA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Spleen_B_cell
178430	39	CTG ...	LHA ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
190133	108	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
520881	120	TTG ...	LLH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
570810	219	CTG ...	LQV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, R1E
175679	48	ATG ...	MSW ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
67050	60	CTG ...	LRA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, Testis
830261	39	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
522995	171	ATG ...	MAP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
520956	171	CTG ...	LAV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Spleen_B_cell
516553	42	GTG ...	VSP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell

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