Transcript 6245 | MetamORF

Transcript

ID CARD

MetamORF ID

6245

ENSMUST00000215574

Name

Slc44a2-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

21320739-21355027

CDS Start-stop positions

21320821-21347970

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:68682

Aliases

1110028E10Rik,
CTL2, ENSMUSG00000057193, MGI:1915932,
NCBI:68682, OFF:Slc44a2, Slc44a2

Chr 9

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1750378	69	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
84754	132	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
87186	174	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
264243	75	ATG ...	MHR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF
257408	51	TTG ...	LTI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF
1584301	108	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
83390	99	CTG ...	LAG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Neutrophil, R1E, v6-5
267829	72	GTG ...	VRA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF
86620	42	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
1587195	66	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
267213	42	CTG ...	LDP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, v6-5
266145	57	CTG ...	LCV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF
762142	63	TTG ...	LRP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil
761113	63	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
255466	75	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF
436452	54	TTG ...	LCK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
86240	78	GTG ...	VGN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Neutrophil, R1E, v6-5
264529	39	ATG ...	MSF ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, v6-5
616209	54	GTG ...	VSR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
85286	63	GTG ...	VIY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, R1E
433602	30	CTG ...	LAS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Neutrophil
624661	51	GTG ...	VPC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
438361	51	ATG ...	MAP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
760306	54	TTG ...	LRG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
83801	69	CTG ...	LDK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, R1E
86756	123	GTG ...	VLA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, R1E
6244	42	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Skin_tumor
617467	30	TTG ...	LLM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
86119	99	CTG ...	LER ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Neutrophil, R1E
270050	123	CTG ...	LLH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, MEF
6360	54	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Skin_tumor
85072	258	TTG ...	LRN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
83928	36	TTG ...	LNK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Neutrophil, R1E
85057	78	GTG ...	VAV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, R1E
621444	66	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1586369	120	GTG ...	VSP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF
87069	168	CTG ...	LQI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, R1E
1331135	186	GTG ...	VSH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
437378	33	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, NSC
760628	105	TTG ...	LGW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF
1330107	36	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
85093	39	TTG ...	LGK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E, v6-5
86778	120	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, R1E
85602	177	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
259973	60	TTG ...	LLC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF
84096	120	CTG ...	LAF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5

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