Transcript 6225 | MetamORF

Transcript

ID CARD

MetamORF ID

6225

ENSMUST00000129466

Name

Tpm1-217

Strand

Biotype

retained_intron

Start-end positions

67032220-67049118

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:22003

Aliases

AA986836,
AI854628, alpha-TM, ENSMUSG00000032366,
MGI:98809, NCBI:22003, OFF:Tpm1,
TM2, Tm3, Tmpa,
Tpm-1, Tpm1, TPM1kappa

Chr 9

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
417175	36	ATG ...	MKK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
436879	99	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
417562	63	AAG ...	KSL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
417250	105	ATC ...	IQL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	C2C12
974770	42	AGG ...	RRN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
6224	123	ATG ...	MSW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	E14, Skin_tumor
265532	87	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
417368	117	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
417548	84	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, Neutrophil
1268639	75	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
417544	75	AGG ...	RPR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	C2C12
417508	54	ATC ...	IES ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	C2C12
417473	234	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
259246	48	ATG ...	MPR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1272144	87	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
269898	81	ATG ...	MNW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14

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