Transcript 62224 | MetamORF

Transcript

ID CARD

MetamORF ID

62224

ENSMUST00000197632

Name

Eif3b-202

Strand

Biotype

retained_intron

Start-end positions

140427090-140430673

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:27979

Aliases

AL033316,
AL033334, AL033369, AW208965,
D5Wsu45e, EIF3-ETA, EIF3-P110,
EIF3-P116, Eif3b, Eif3s9,
ENSMUSG00000056076, MGI:106478, NCBI:27979,
OFF:Eif3b, PRT1

Chr 5

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
63036	117	CTG ...	LAT ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1238032	126	ACG ...	TFS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1237280	69	ATC ...	ILT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
521815	219	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
62223	102	ATG ...	MTL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
1664772	66	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
902605	60	ATA ...	IRR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
902391	105	AGG ...	RMT ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
63215	144	GTG ...	VRW ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
62746	36	GTG ...	VQL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1239848	33	ATT ...	ILC ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1239382	165	ACG ...	TSI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1234655	51	AAG ...	KRG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1237621	60	ATT ...	IQR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1238587	54	AGG ...	RFS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
904048	81	ATC ...	IIW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
519963	78	CTG ...	LGR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
183272	48	TTG ...	LQI ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
64044	132	TTG ...	LVT ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
904283	30	ATA ...	ILL ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1236733	189	ACG ...	TCA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
65336	114	CTG ...	LMD ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1237408	63	ACG ...	TGH ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1236250	84	AAG ...	KAC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
901550	147	ATC ...	ISG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1234894	84	ATC ...	III ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1235762	66	AAG ...	KQI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1235209	129	AAG ...	KGT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1236429	150	ACG ...	TYV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1236820	93	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
178659	33	ATG ...	MDR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5

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