Transcript 61930 | MetamORF

Transcript

ID CARD

MetamORF ID

61930

ENSMUST00000135906

Name

Orc5-202

Strand

Biotype

retained_intron

Start-end positions

22486485-22550304

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:26429

Aliases

AL033327,
ENSMUSG00000029012, MGI:1347044, MmORC5,
NCBI:26429, OFF:Orc5, Orc5,
Orc5l

Chr 5

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169439	30	ATG ...	MGK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1235707	63	AAG ...	KQS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1089655	36	CTG ...	LNI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1311625	72	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1239801	147	ATA ...	IVD ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1236939	36	TTG ...	LDQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14
1089678	42	GTG ...	VNF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
172327	87	CTG ...	LDK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
168683	72	TTG ...	LES ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1236538	90	ATG ...	MII ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1236662	45	AAG ...	KIN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1235094	33	ATG ...	MDT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
62523	105	GTG ...	VTL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Testis, v6-5
65942	93	CTG ...	LLT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Testis, v6-5
179952	72	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
62616	147	CTG ...	LSH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Testis
1085288	60	CTG ...	LHT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
61929	219	CTG ...	LPH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
66308	204	GTG ...	VNC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1239939	84	ATA ...	IVG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
176318	54	GTG ...	VLN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
170446	36	TTG ...	LGK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1240731	132	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1086760	63	TTG ...	LLH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
565678	48	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1087993	51	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1089471	57	ATG ...	MFY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1239413	42	ATA ...	ITQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1087598	39	GTG ...	VLN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
65144	168	TTG ...	LEQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1237237	42	ATC ...	IFL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1237615	177	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14

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