Transcript 61459 | MetamORF

Transcript

ID CARD

MetamORF ID

61459

ENSMUST00000154768

Name

Rpl21-206

Strand

Biotype

retained_intron

Start-end positions

146833146-146834605

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:19933

Aliases

8430440E03Rik,
ENSMUSG00000041453, L21, MGI:1278340,
NCBI:19933, OFF:Rpl21, Rpl21

Chr 5

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
174084	66	ATG ...	MPG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
61458	57	TTG ...	LPG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell, Testis
63361	30	TTG ...	LSM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
518675	105	ATG ...	MLG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
560413	57	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
518822	180	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
559466	54	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
569070	84	GTG ...	VWR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
569901	186	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
563205	33	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
167960	72	CTG ...	LAQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
520466	159	CTG ...	LRV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
516942	144	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
563240	216	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3

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