Transcript 61365 | MetamORF

Transcript

ID CARD

MetamORF ID

61365

ENSMUST00000163409

Name

Klhl7-202

Strand

Biotype

protein_coding

Start-end positions

24100623-24160792

CDS Start-stop positions

24100755-24159489

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:52323

Aliases

2700038B03Rik,
D5Ertd363e, ENSMUSG00000028986, Klhl7,
MGI:1196453, NCBI:52323, OFF:Klhl7,
SBBI26

Chr 5

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
560168	45	TTG ...	LWW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
63608	279	CTG ...	LDN ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, R1E, Testis
1557473	81	ATG ...	MMS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
568554	51	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
179994	75	GTG ...	VAG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
176030	48	TTG ...	LEA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
65270	48	TTG ...	LQV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
176670	63	GTG ...	VDR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
169528	30	TTG ...	LQS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
63773	66	CTG ...	LRI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
175833	30	ATG ...	MQH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
562701	84	TTG ...	LGQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1558732	78	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
562186	75	TTG ...	LSI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	3T3
1659862	51	TTG ...	LLI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
566871	54	TTG ...	LNA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
568432	45	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1661910	54	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
185152	63	CTG ...	LSP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
1240158	237	AAG ...	KMV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
173125	84	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
568285	51	CTG ...	LRF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1511219	51	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
170399	36	GTG ...	VCL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
67142	297	CTG ...	LPQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, R1E, Testis
564066	51	GTG ...	VQQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	3T3
569954	78	CTG ...	LMT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
63846	138	TTG ...	LGH ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, E14, R1E, Testis
565648	45	TTG ...	LKN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
62221	42	GTG ...	VAH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
186188	63	ATG ...	MLN ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
177502	99	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
62089	231	GTG ...	VSP ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, E14, R1E, Testis
567451	168	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
66123	165	CTG ...	LAG ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, R1E, Testis
565901	33	ATG ...	MQQ ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
63659	270	GTG ...	VEY ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, R1E, Testis
1239227	213	AGG ...	RGV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
187976	54	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1659774	48	TTG ...	LIL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
191040	120	TTG ...	LEA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
559899	75	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
570080	63	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
61364	201	GTG ...	VKC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E, Testis
186350	120	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
563019	93	ATG ...	MCV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
1090283	60	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1085881	120	ATG ...	MED ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	E14, Glioma, Liver, MEF, MESC
561399	69	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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