Transcript 6107 | MetamORF

Transcript

ID CARD

MetamORF ID

6107

ENSMUST00000214549

Name

Ldlr-204

Strand

Biotype

retained_intron

Start-end positions

21745323-21749914

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:16835

Aliases

ENSMUSG00000032193,
Hlb301, Ldlr, MGI:96765,
NCBI:16835, OFF:Ldlr

Chr 9

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
255640	171	CTG ...	LLW ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, v6-5
623479	51	TTG ...	LPS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
924261	51	ACG ...	TSS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
922379	60	GTG ...	VSH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
6208	30	TTG ...	LSH ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
435310	75	GTG ...	VRI ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, v6-5
922317	30	ATC ...	ISY ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1270489	75	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
260066	150	CTG ...	LKN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, v6-5
921405	60	ACG ...	TMW ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1268613	162	AGG ...	RNW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1273590	45	GTG ...	VTW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
619805	42	TTG ...	LSL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
6106	45	GTG ...	VEE ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Skin_tumor, v6-5
1269742	45	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1273325	51	AGG ...	RFL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1268765	108	AGG ...	RQP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
924559	39	ATC ...	IFF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
268478	201	CTG ...	LVA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, v6-5
623447	36	TTG ...	LGP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
1269978	105	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
921731	72	AGG ...	RIS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
623658	39	CTG ...	LWT ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, MEF, Neutrophil, v6-5
268806	174	GTG ...	VVT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil
924208	141	ATC ...	INS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
260189	207	CTG ...	LTT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil
923991	72	AGG ...	RAQ ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
265519	168	CTG ...	LWR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil
1269782	147	AAG ...	KNI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
6584	36	CTG ...	LAA ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, MEF, Skin_tumor, v6-5
438464	114	CTG ...	LWS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF
255229	84	TTG ...	LTT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, R1E, v6-5

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