Transcript 6091 | MetamORF

Transcript

ID CARD

MetamORF ID

6091

ENSMUST00000214970

Name

Tspan3-202

Strand

Biotype

processed_transcript

Start-end positions

56131725-56160789

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:56434

Aliases

1700055K04Rik,
ENSMUSG00000032324, MGI:1928098, NCBI:56434,
OFF:Tspan3, TM4-A, Tm4sf8,
Tspan3

Chr 9

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
263422	72	ATG ...	MSS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
86543	99	CTG ...	LAS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
6562	60	CTG ...	LIG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor
263632	42	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
1032275	90	CTG ...	LGM ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, v6-5
6135	99	GTG ...	VII ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor
87723	159	GTG ...	VKK ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
6097	57	ATG ...	MTT ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor
1033129	93	CTG ...	LLG ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, v6-5
83213	45	CTG ...	LAN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC
87946	114	TTG ...	LAF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
1031849	66	GTG ...	VLC ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, v6-5
6592	84	GTG ...	VSL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, NSC, Skin_tumor
6264	123	GTG ...	VYT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor
84588	168	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, NSC
1031991	135	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
6410	177	GTG ...	VGA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor
1032119	63	TTG ...	LCR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, v6-5
261054	171	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
6493	42	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, Skin_tumor
1275670	153	AAG ...	KLQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
623011	30	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
6751	78	TTG ...	LLF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor
259447	48	ATG ...	MTT ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
258880	54	CTG ...	LGK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
85994	39	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, NSC
261261	36	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
255468	96	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
83759	93	TTG ...	LIA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
1033076	93	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
621936	30	ATG ...	MCT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
266918	30	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, NSC
259426	57	CTG ...	LPK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
256469	39	TTG ...	LVQ ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
85812	135	GTG ...	VYK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
267812	69	ATG ...	MDC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
256987	33	GTG ...	VRM ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
86955	147	GTG ...	VEF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC
6090	168	TTG ...	LHC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, Skin_tumor
1032153	81	CTG ...	LCA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, NSC, v6-5
6827	138	TTG ...	LMH ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
6536	102	GTG ...	VVI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC, Skin_tumor

Export data