Transcript 605193

Transcript

ID CARD

MetamORF ID

605193

ENSMUST00000105381

Name

Bsg-202

Strand

Biotype

protein_coding

Start-end positions

79709598-79711969

CDS Start-stop positions

79709769-79711557

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:12215

Aliases

AI115436,
AI325119, Bsg, CD147,
EMMPRIN, ENSMUSG00000023175, HT-7,
MGI:88208, NCBI:12215, OFF:Bsg

Chr 10

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1263849	69	AGG ...	RAL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
416714	39	AGG ...	RKS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
79599	69	ATG ...	MHP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
528609	102	CTG ...	LAP ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
606511	45	ATG ...	MAS ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E
271312	99	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
423015	96	CTG ...	LRS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, v6-5
590363	36	ATG ...	MWW ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, R1E
1282977	69	AGG ...	RWQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
194999	108	TTG ...	LTL ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
428408	111	ATG ...	MLT ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, v6-5
566706	51	CTG ...	LQV ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, v6-5
928465	111	ATT ...	IPV ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1261278	60	ATA ...	IAL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
904205	45	ATT ...	IGS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
588763	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
88328	171	GTG ...	VRE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
929301	111	ATT ...	IGS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
5758	93	TTG ...	LRN ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
918338	51	AAG ...	KPM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
261557	75	CTG ...	LWL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
929272	177	ATT ...	IPV ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1260630	75	ACG ...	TPR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
514848	39	GTG ...	VCG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E, v6-5
90449	159	TTG ...	LRN ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
418490	45	CTG ...	LSR ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, NSC, R1E, v6-5
605192	33	GTG ...	VAL ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, E14, NSC, R1E
90278	135	ATG ...	MHP ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
286369	84	ATG ...	MPP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
7808	54	GTG ...	VAR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, NSC, R1E, v6-5
6896	105	GTG ...	VRE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5

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