Transcript 603618

Transcript

ID CARD

MetamORF ID

603618

ENSMUST00000148497

Name

Piezo1-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

122485924-122498204

CDS Start-stop positions

122486556-

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:234839

Aliases

9630020g22,
ENSMUSG00000014444, Fam38a, MGI:3603204,
mKIAA0233, NCBI:234839, OFF:Piezo1,
Piezo1

Chr 8

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
604795	273	CTG ...	LHI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, BMDC
610683	66	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
606030	189	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
918001	279	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
606182	45	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	3T3
607359	78	CTG ...	LHG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
610521	270	GTG ...	VKD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
607532	186	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
918089	291	AAG ...	KDH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
603617	60	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	NMD sORF	3T3
611321	207	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
604113	183	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
917241	78	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	BMDC
609303	156	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
610999	231	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3

Export data