Transcript 60312 | MetamORF

Transcript

ID CARD

MetamORF ID

60312

ENSMUST00000123294

Name

Ccnc-205

Strand

Biotype

processed_transcript

Start-end positions

21727753-21747962

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:51813

Aliases

AI451004,
AU020987, Ccnc, CG1C,
ENSMUSG00000028252, MGI:1858199, NCBI:51813,
OFF:Ccnc

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1886033	141	TTG ...	LEI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
550911	45	CTG ...	LSD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
1178551	120	TTG ...	LDK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1178254	102	TTG ...	LKE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
509990	69	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
549202	132	TTG ...	LQW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
60792	282	CTG ...	LLY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Testis
1654955	51	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
60311	279	CTG ...	LYP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Testis
164621	114	CTG ...	LKS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
149047	30	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1176671	105	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
509995	81	GTG ...	VYH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
165505	75	GTG ...	VFL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, R1E, v6-5
554649	30	GTG ...	VFL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
60630	186	GTG ...	VDM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Testis
509414	87	TTG ...	LIV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
513001	60	TTG ...	LLQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
1233832	294	ACG ...	TDL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
509774	48	GTG ...	VQD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, R1E
1656980	93	GTG ...	VND ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
147336	48	ATG ...	MIP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF

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