Transcript 60257 | MetamORF

Transcript

ID CARD

MetamORF ID

60257

ENSMUST00000130833

Name

Eya3-205

Strand

Biotype

processed_transcript

Start-end positions

132704400-132721649

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:14050

Aliases

AI844637,
ENSMUSG00000028886, Eya3, MGI:109339,
NCBI:14050, OFF:Eya3

Chr 4

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1380417	30	GTG ...	VGE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
61260	102	GTG ...	VDW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
548635	36	ATG ...	MDE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
60599	285	CTG ...	LIT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
60079	267	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
901103	123	ACG ...	TTS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
61287	84	CTG ...	LAF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
1783933	99	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1232258	159	ATT ...	IVS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
60256	240	CTG ...	LYG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
59938	123	GTG ...	VIG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
60458	63	GTG ...	VRE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
60801	120	GTG ...	VGV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, R1E, Spleen_B_cell, Testis

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