Transcript 60045 | MetamORF

Transcript

ID CARD

MetamORF ID

60045

ENSMUST00000154811

Name

Nasp-207

Strand

Biotype

processed_transcript

Start-end positions

116611467-116627493

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:50927

Aliases

5033430J04Rik,
AI131596, AI317140, D4Ertd767e,
ENSMUSG00000028693, Epcs32, MGI:1355328,
Nasp, Nasp-T, NCBI:50927,
OFF:Nasp

Chr 4

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1233625	195	AAG ...	KKY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
555610	36	CTG ...	LLM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
60304	255	GTG ...	VMG ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
510367	66	ATG ...	MEK ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, Spleen_B_cell
1227149	114	ATG ...	MHS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
159803	114	CTG ...	LDV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC
152152	84	CTG ...	LGL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, C2C12, MEF, Neutrophil, NSC
1228583	30	ATT ...	IRT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
514066	36	TTG ...	LVE ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, Spleen_B_cell
414086	51	ATT ...	IED ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	C2C12
550009	36	ATG ...	MWI ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
1230191	33	ATC ...	IAA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
160982	60	GTG ...	VMG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC
1224984	183	GTG ...	VWR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1233030	243	ATT ...	IPA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
152790	63	CTG ...	LVM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil, NSC
510632	51	ATG ...	MSV ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, Spleen_B_cell
1225776	48	ATT ...	IPA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
60729	132	CTG ...	LEL ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
155122	108	GTG ...	VDS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil, NSC
512095	111	CTG ...	LVF ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC
511304	102	TTG ...	LGN ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, Spleen_B_cell
1557070	30	ATG ...	MHS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1229924	120	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1227873	105	AAG ...	KKY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
55991	60	TTG ...	LKM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1228400	36	AAG ...	KKE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1227076	135	GTG ...	VTF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1059877	51	GTG ...	VLF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
1229953	45	AGG ...	RSA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
513251	81	GTG ...	VHV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, Spleen_B_cell
1653935	75	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
60210	279	CTG ...	LGL ...	Ribo-seq	CTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
509613	87	CTG ...	LPT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
60044	258	CTG ...	LVM ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1232175	120	AGA ...	RME ...	Ribo-seq	AGA		1	sORFs_org_Mouse	ncRNA sORF	E14
58137	54	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
56326	48	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
510183	45	GTG ...	VEK ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC, Spleen_B_cell
61232	51	GTG ...	VTF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, Testis
513280	105	GTG ...	VLG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Spleen_B_cell

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