Transcript 59775 | MetamORF

Transcript

ID CARD

MetamORF ID

59775

ENSMUST00000180577

Name

Snrnp40-202

Strand

Biotype

processed_transcript

Start-end positions

130360194-130375576

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:66585

Aliases

0610009C03Rik,
ENSMUSG00000074088, MGI:1913835, NCBI:66585,
OFF:Snrnp40, Prp8bp, Snrnp40,
Wdr57

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
510842	30	ATG ...	MET ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1229915	54	AAG ...	KGH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
149257	48	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, v6-5
150565	162	GTG ...	VWD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Neutrophil, v6-5
154988	96	TTG ...	LWN ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
153337	48	CTG ...	LQV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
156472	51	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
160393	168	GTG ...	VAV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Neutrophil, v6-5
59838	180	GTG ...	VAV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
150894	36	GTG ...	VME ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC
145509	57	TTG ...	LKG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
1177898	153	CTG ...	LPH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
155039	84	ATG ...	MSC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
1227966	69	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
60009	147	GTG ...	VKR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
151969	75	ATG ...	MRG ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
1888783	117	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
147762	108	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
149335	135	GTG ...	VKR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, v6-5
160738	84	GTG ...	VYC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
152245	39	ATG ...	MDP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
158793	105	GTG ...	VNS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
544711	45	GTG ...	VFF ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1178097	48	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
509325	60	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1177160	39	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
59774	174	GTG ...	VWD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1226077	213	AAG ...	KRK ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF

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