Transcript 59710 | MetamORF

Transcript

ID CARD

MetamORF ID

59710

ENSMUST00000148613

Name

Hmgcl-204

Strand

Biotype

processed_transcript

Start-end positions

135959727-135962617

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:15356

Aliases

AW476067,
ENSMUSG00000028672, HL, Hmgcl,
MGI:96158, NCBI:15356, OFF:Hmgcl

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1428442	150	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
513940	33	ATG ...	MRS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
59504	78	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1429197	63	CTG ...	LVY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
152040	126	GTG ...	VAG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
510017	51	ATG ...	MIP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
149206	249	TTG ...	LYS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver
512674	93	TTG ...	LWT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
60229	126	CTG ...	LNG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell
554253	81	CTG ...	LWQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
60314	153	TTG ...	LAT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
509286	147	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
511788	138	GTG ...	VDS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
56220	99	GTG ...	VNL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
59709	213	GTG ...	VDS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
554680	96	GTG ...	VLW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
545315	42	CTG ...	LSL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
1427129	171	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
553347	69	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Liver
60506	138	CTG ...	LVY ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis
1429403	135	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Liver
59805	222	GTG ...	VSV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell
1428936	96	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
60055	201	GTG ...	VAG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
146059	63	TTG ...	LPR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
511221	42	ATG ...	MVK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
510815	63	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
870094	90	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

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