Transcript 59658 | MetamORF

Transcript

ID CARD

MetamORF ID

59658

ENSMUST00000142660

Name

Dhdds-208

Strand

Biotype

processed_transcript

Start-end positions

133969063-134000393

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:67422

Aliases

3222401G21Rik,
cis-IPTase, CIT, Dhdds,
DS, ENSMUSG00000012117, HDS,
MGI:1914672, NCBI:67422, OFF:Dhdds,
W91638

Chr 4

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
509722	195	CTG ...	LER ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
509834	126	CTG ...	LGI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
1059518	72	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
59645	270	CTG ...	LQF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
58868	66	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
516147	243	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, R1E, Spleen_B_cell
161202	90	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
512284	51	GTG ...	VFE ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
59657	285	CTG ...	LCE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
511484	81	CTG ...	LWP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
511449	162	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
57205	39	CTG ...	LQF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, v6-5
165509	237	CTG ...	LWE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, R1E, Spleen_B_cell
1080524	30	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
513242	39	TTG ...	LHT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
57647	75	CTG ...	LHL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
58257	96	GTG ...	VFQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1178304	33	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
147186	51	TTG ...	LRT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, NSC
513427	174	GTG ...	VTE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
513648	48	ATG ...	MSA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
57261	84	CTG ...	LGD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
165253	135	GTG ...	VER ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, Neutrophil
57726	60	TTG ...	LDL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
1656851	33	CTG ...	LFF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF
58197	69	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
162393	96	TTG ...	LRM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
512738	111	GTG ...	VTV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
59425	99	GTG ...	VCI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
151236	48	ATG ...	MDQ ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, v6-5
58565	54	CTG ...	LCE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, v6-5
510917	30	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1177611	42	GTG ...	VFP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1655602	72	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
514158	54	CTG ...	LVF ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
147635	69	CTG ...	LST ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
57956	114	CTG ...	LQK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
512582	132	TTG ...	LNL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
512182	48	CTG ...	LDL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
515492	291	GTG ...	VIS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell

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