Transcript 595253

Transcript

ID CARD

MetamORF ID

595253

ENSMUST00000172442

Name

Slc25a3-208

Strand

Biotype

retained_intron

Start-end positions

91119775-91124022

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:18674

Aliases

5730556H19Rik,
ENSMUSG00000061904, MGI:1353498, NCBI:18674,
OFF:Slc25a3, Phc, PTP,
Slc25a3

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
600514	57	GTG ...	VTP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
81133	147	CTG ...	LCG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
57356	114	CTG ...	LTH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1240630	90	ACG ...	TDL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1243186	159	AAG ...	KYY ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
595252	48	GTG ...	VSR ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, R1E
57852	168	CTG ...	LSP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, R1E
1251058	204	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
435565	30	ATG ...	MHC ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, v6-5
1273254	78	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
76793	129	TTG ...	LWA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
57855	153	GTG ...	VWL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1235902	63	TTG ...	LGV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1278585	90	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1258796	237	ATG ...	MAC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1233100	78	ATC ...	IFG ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14

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