Transcript 590 | MetamORF

Transcript

ID CARD

MetamORF ID

590

ENSMUST00000058030

Name

Mtap-201

Strand

Biotype

protein_coding

Start-end positions

89137122-89181081

CDS Start-stop positions

89137492-89179506

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:66902

Aliases

1300019I21Rik,
ENSMUSG00000062937, MGI:1914152, MSAP,
Mtap, NCBI:66902, OFF:Mtap

Chr 4

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
413766	33	ATA ...	ILH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
515468	51	ATG ...	MIV ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
514397	81	GTG ...	VYF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
414396	33	ATA ...	ILH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
511451	114	CTG ...	LLT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
514325	78	ATG ...	MQA ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
516286	69	TTG ...	LPW ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
514171	54	CTG ...	LWT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
823391	54	TTG ...	LGR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, v6-5
512692	39	TTG ...	LQC ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
509296	36	TTG ...	LRV ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
509050	51	TTG ...	LPW ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
515601	87	TTG ...	LIV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
509861	45	GTG ...	VTW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell
511020	36	TTG ...	LVE ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1227197	42	AGG ...	RTS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
515881	45	GTG ...	VTW ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
1176886	48	CTG ...	LRN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1228754	39	ATG ...	MWI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
514811	72	TTG ...	LQD ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
516296	87	ATG ...	MMG ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
515240	48	CTG ...	LRN ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
548299	48	ATG ...	MPI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
514589	30	TTG ...	LTN ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
414073	57	AAG ...	KEE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
513736	30	TTG ...	LTN ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Spleen_B_cell
514646	120	CTG ...	LFQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
149685	42	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
514314	156	TTG ...	LCT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
509078	75	TTG ...	LRG ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell, v6-5
548775	33	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, v6-5
512472	84	CTG ...	LGL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, NSC, Spleen_B_cell, v6-5
515336	102	TTG ...	LLR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
1228799	144	ATG ...	MGV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
156309	39	GTG ...	VQT ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
589	63	CTG ...	LYT ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
514789	48	CTG ...	LVT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
558705	39	CTG ...	LNR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
414426	57	AAG ...	KEE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
511160	48	CTG ...	LVT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell
511354	60	ATG ...	MQA ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
514379	69	GTG ...	VPE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
514624	84	ATG ...	MGV ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1228725	72	AAG ...	KPY ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
511878	33	GTG ...	VPF ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
513168	84	TTG ...	LLR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
509776	72	CTG ...	LEF ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
510032	33	ATG ...	MIV ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1103	36	TTG ...	LLC ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
515820	90	CTG ...	LEF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
513680	102	CTG ...	LFQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
515611	39	ATG ...	MWI ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5

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