Transcript 588049

Transcript

ID CARD

MetamORF ID

588049

ENSMUST00000163183

Name

Numa1-202

Strand

Biotype

protein_coding

Start-end positions

102001165-102014955

CDS Start-stop positions

-102014247

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:101706

Aliases

6720401E04Rik,
AA764025, AL022610, AU014979,
ENSMUSG00000066306, MGI:2443665, NCBI:101706,
NuMA, Numa1, OFF:Numa1

Chr 7

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1259265	132	AAG ...	KDV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1252044	90	AGG ...	RSW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1259870	93	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1255646	57	ATG ...	MQT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	E14
1517550	63	TTG ...	LSR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	NSC
595158	66	ATG ...	MLR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	E14
592035	78	ATG ...	MSP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, MEF
595378	48	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, NSC
1252678	255	AAG ...	KSQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1253324	51	AGG ...	RKG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1673863	33	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
1674224	45	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1320911	219	ATG ...	MVP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
1672146	90	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1322215	210	GTG ...	VSL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	E14
220411	132	ATG ...	MMP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	3T3, B_cell, MEF, v6-5
226579	129	ATG ...	MPR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	3T3, B_cell, MEF
1252807	111	AAG ...	KPG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
1319827	204	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14
601443	111	CTG ...	LLT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, B_cell, NSC, v6-5
597755	72	CTG ...	LET ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	3T3, B_cell, NSC
601823	135	ATG ...	MKD ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, B_cell, NSC, v6-5
602386	108	CTG ...	LTP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, NSC, v6-5
1260380	72	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
600300	63	TTG ...	LPP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, E14, NSC
1672843	39	CTG ...	LNV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
602356	33	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
602177	42	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
225396	78	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	E14
588124	84	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
1257370	33	ATA ...	ICP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	E14
593627	63	TTG ...	LPP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, E14, NSC
1254482	33	AAG ...	KHR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
600447	48	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, NSC
1318553	42	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14
595860	87	GTG ...	VEP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, E14, NSC
1674022	237	GTG ...	VRG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
599687	87	GTG ...	VEP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, E14
595842	72	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
1320645	75	ATG ...	MPS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	E14, MEF

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