Transcript 587987

Transcript

ID CARD

MetamORF ID

587987

ENSMUST00000206149

Name

Iqgap1-208

Strand

Biotype

retained_intron

Start-end positions

80749377-80803263

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:29875

Aliases

AA682088,
D7Ertd237e, D7Ertd257e, ENSMUSG00000030536,
Iqgap1, MGI:1352757, mKIAA0051,
NCBI:29875, OFF:Iqgap1

Chr 7

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
531952	63	CTG ...	LTE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
422853	90	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
843177	57	TTG ...	LVR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
842662	93	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
589763	48	ATG ...	MKR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
841427	63	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
591225	66	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
531119	60	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
842900	42	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
842236	42	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
592013	39	TTG ...	LIA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
531060	93	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
424105	66	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
593662	111	CTG ...	LKA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
530824	99	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
840554	51	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
841009	48	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
595055	48	GTG ...	VDH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
597397	99	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
590181	33	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
591683	63	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
594077	57	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
423729	63	TTG ...	LLW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
844387	120	CTG ...	LMK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
532713	63	TTG ...	LKK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
844648	45	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
845075	72	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
594733	39	GTG ...	VNL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
531594	81	ATG ...	MPC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
4098	111	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
591858	75	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
531458	42	ATG ...	MRS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
4623	30	ATG ...	MIE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
589611	153	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
595694	30	GTG ...	VVH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
840475	69	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
588446	69	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
422894	30	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
591715	69	TTG ...	LQL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
841750	33	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
845320	120	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
594693	63	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
424222	48	ATG ...	MHL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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