Transcript 58319 | MetamORF

Transcript

ID CARD

MetamORF ID

58319

ENSMUST00000020285

Name

Sar1a-201

Strand

Biotype

protein_coding

Start-end positions

61680310-61693297

CDS Start-stop positions

61684896-61691401

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:20224

Aliases

1600019H17Rik,
ENSMUSG00000020088, MGI:98230, NCBI:20224,
OFF:Sar1a, Sar1a, Sara,
Sara1

Chr 10

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
72628	45	TTG ...	LSG ...	Ribo-seq	TTG	weak	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
90164	39	TTG ...	LGC ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
65551	66	ATG ...	MQS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
58318	30	ATG ...	MAS ...	Ribo-seq	ATG	strong	22	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
89123	129	ATG ...	MKQ ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
262862	126	CTG ...	LMK ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
75989	57	GTG ...	VKK ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
90484	48	GTG ...	VKY ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
978053	30	GTG ...	VGM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
90197	72	ATG ...	MQS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
606520	63	GTG ...	VQC ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, v6-5
90127	84	TTG ...	LTG ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
66801	78	TTG ...	LTG ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
636877	66	CTG ...	LRE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
552799	60	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
1654407	174	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	MEF
636269	63	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
235659	39	TTG ...	LIS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, v6-5
84090	42	GTG ...	VKY ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
78536	123	ATG ...	MKQ ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
287859	132	CTG ...	LMK ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1247680	195	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
90057	63	GTG ...	VKK ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
160060	48	GTG ...	VRI ...	Ribo-seq	GTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
70511	39	CTG ...	LCG ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
288860	126	GTG ...	VDL ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
66692	45	GTG ...	VDL ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
636730	99	CTG ...	LAD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF
81618	33	TTG ...	LGC ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
556731	108	GTG ...	VTY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
568010	33	ATG ...	MRA ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, v6-5
88795	51	GTG ...	VRI ...	Ribo-seq	GTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
637004	75	CTG ...	LCA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell

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