Transcript 581245

Transcript

ID CARD

MetamORF ID

581245

ENSMUST00000186736

Name

Fn1-206

Strand

Biotype

protein_coding

Start-end positions

71645643-71653172

CDS Start-stop positions

-71652982

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:14268

Aliases

E330027I09,
ENSMUSG00000026193, Fn, Fn-1,
Fn1, MGI:95566, NCBI:14268,
OFF:Fn1

Chr 1

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
581244	108	GTG ...	VPG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
643902	69	CTG ...	LDD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
708263	48	GTG ...	VSG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
848989	51	ATG ...	MDA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	BMDC, Liver
658689	48	TTG ...	LSR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
888427	57	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
418557	225	CTG ...	LRG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
356636	69	TTG ...	LIM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
722379	87	CTG ...	LHR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
411603	189	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
891817	81	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
369150	63	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
700213	54	CTG ...	LYL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
716802	90	CTG ...	LGK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
396263	60	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
713529	204	GTG ...	VAT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, Liver
644209	54	GTG ...	VSV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Liver

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