Transcript 57950 | MetamORF

Transcript

ID CARD

MetamORF ID

57950

ENSMUST00000147550

Name

Gnl2-206

Strand

Biotype

processed_transcript

Start-end positions

125053151-125055380

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:230737

Aliases

BC003262,
ENSMUSG00000028869, Gnl2, HUMAUANTIG,
MGI:2385207, NCBI:230737, Ngp-1,
OFF:Gnl2

Chr 4

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
511054	99	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
57949	111	GTG ...	VRY ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, Testis, v6-5
58418	87	GTG ...	VKN ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell, Testis
508944	69	TTG ...	LQN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
509228	87	GTG ...	VLC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
554676	48	ATG ...	MHR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, R1E
511561	30	GTG ...	VCV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, R1E, Spleen_B_cell
510053	84	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
146037	36	GTG ...	VGC ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, R1E, Spleen_B_cell, v6-5
145586	33	TTG ...	LVC ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell

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