Transcript 57495 | MetamORF

Transcript

ID CARD

MetamORF ID

57495

ENSMUST00000136669

Name

Plaa-205

Strand

Biotype

processed_transcript

Start-end positions

94585760-94603135

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:18786

Aliases

2410007N06,
AI536418, AU018445, AW208417,
D4Ertd618e, ENSMUSG00000028577, MGI:104810,
NCBI:18786, OFF:Plaa, PLA2P,
Plaa, PLAP, Ufd3

Chr 4

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
514128	60	GTG ...	VAD ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, NSC, Spleen_B_cell
157792	51	GTG ...	VSV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
57494	99	CTG ...	LDV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell, Testis
57914	126	CTG ...	LSC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
60123	252	CTG ...	LEV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Neutrophil, R1E, Testis, v6-5
413755	213	ATA ...	IPA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	MEF
1226821	129	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
512297	30	CTG ...	LCK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
146162	60	CTG ...	LEN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1654676	117	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
59054	84	CTG ...	LVC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell, Testis
154417	36	GTG ...	VAH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
513301	132	CTG ...	LQA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
150729	51	TTG ...	LGH ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
150360	66	ATG ...	MRP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
510512	57	CTG ...	LCP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
155075	45	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
57922	81	GTG ...	VCC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell, Testis
1231956	267	ATC ...	ITG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1226541	30	AGG ...	RLE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
153073	63	ATG ...	MNF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
58002	183	GTG ...	VTT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
511599	63	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Spleen_B_cell
510711	63	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
549249	147	GTG ...	VRQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
513911	84	GTG ...	VDE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
57534	93	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
1230464	126	ATT ...	ILP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
826123	42	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1655776	90	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
511950	66	GTG ...	VPG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
1655364	126	GTG ...	VQT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF

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