Transcript 57288 | MetamORF

Transcript

ID CARD

MetamORF ID

57288

ENSMUST00000174372

Name

Slc2a1-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

119108914-119137330

CDS Start-stop positions

119108955-119133357

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:20525

Aliases

ENSMUSG00000028645,
Glut-1, Glut1, M100200,
MGI:95755, NCBI:20525, OFF:Slc2a1,
Rgsc200, Slc2a1

Chr 4

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
147247	39	TTG ...	LAW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, NSC, Spleen_B_cell
551544	72	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1016949	234	GTG ...	VTR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil
160712	60	CTG ...	LCT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
991	48	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Spleen_B_cell
58906	165	GTG ...	VLL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1377621	285	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
155642	54	TTG ...	LDV ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, E14, MEF, NSC, Spleen_B_cell
545063	123	ATG ...	MEP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1016244	159	CTG ...	LFR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
896601	117	ACG ...	TTD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
157753	63	CTG ...	LAS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
551448	30	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, v6-5
147453	72	TTG ...	LLW ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
1016174	189	GTG ...	VFY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
150749	114	TTG ...	LWP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, R1E, Spleen_B_cell, v6-5
154912	72	GTG ...	VCS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, MEF, Spleen_B_cell, v6-5
509291	156	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
553292	87	CTG ...	LWF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
156972	54	TTG ...	LCP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, NSC, Spleen_B_cell
653	57	TTG ...	LWL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Spleen_B_cell
1137	51	CTG ...	LLC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Spleen_B_cell
159269	81	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
1059450	111	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
1016882	222	CTG ...	LFV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1017013	126	CTG ...	LLQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Neutrophil, R1E, v6-5
1376814	162	ATG ...	MSF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
1060027	78	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
510921	75	GTG ...	VAI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Liver, Spleen_B_cell
1060072	108	TTG ...	LPF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
153658	48	CTG ...	LWC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, NSC
147273	60	CTG ...	LAL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, NSC, Spleen_B_cell
149738	78	GTG ...	VRP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, v6-5
58534	198	CTG ...	LCG ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
514121	165	TTG ...	LWP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
159516	135	CTG ...	LVL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	3T3, BMDC, E14, Spleen_B_cell, v6-5
513840	261	CTG ...	LKK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1378871	297	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1378235	279	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
896861	240	AGG ...	RDS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
158985	42	ATG ...	MWE ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, NSC
899826	168	ACG ...	TVL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
547055	114	TTG ...	LRS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
1016436	165	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Neutrophil
511302	201	GTG ...	VFG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
549899	99	GTG ...	VTH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
512699	102	GTG ...	VAS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, Spleen_B_cell, v6-5
511860	153	CTG ...	LLS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1287	63	CTG ...	LDD ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, E14, MEF, Neutrophil, Spleen_B_cell
1019	174	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, R1E, v6-5
149856	33	TTG ...	LWA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, NSC, R1E, Spleen_B_cell
900077	258	AAG ...	KKL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
1178023	105	CTG ...	LTC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1016477	222	CTG ...	LQE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, Neutrophil
154859	30	CTG ...	LAW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, NSC, Spleen_B_cell
897900	162	ATG ...	MVH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14
1376987	150	TTG ...	LPT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
1081828	198	ATG ...	MDT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
57287	156	GTG ...	VLF ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
899608	51	AAG ...	KTP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
854	75	CTG ...	LWE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Spleen_B_cell, v6-5
152530	78	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
152291	129	ATG ...	MIS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, MEF, NSC, v6-5
553544	39	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, v6-5
552936	57	GTG ...	VYP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, v6-5
152445	69	CTG ...	LWL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream NMD sORF	3T3, BMDC, E14, MEF, Spleen_B_cell, v6-5

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