Transcript 57002 | MetamORF

Transcript

ID CARD

MetamORF ID

57002

ENSMUST00000145364

Name

Rsrp1-203

Strand

Biotype

processed_transcript

Start-end positions

134923645-134927372

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:27981

Aliases

2700043I21Rik,
D4Ucla2, D4Wsu53e, ENSMUSG00000037266,
MGI:106498, NCBI:27981, OFF:Rsrp1,
Rsrp1

Chr 4

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
60029	81	TTG ...	LPA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Neutrophil, NSC, Testis, v6-5
154246	42	GTG ...	VEG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
512068	33	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
60758	102	CTG ...	LGT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, NSC, Testis, v6-5
1510383	75	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1233380	183	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1231852	84	AGG ...	RGQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
58488	144	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
898433	111	ACG ...	TQQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
414330	135	ATA ...	IAF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	C2C12
900115	42	AGG ...	RGQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1232581	153	ACG ...	TQQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
59755	240	GTG ...	VYP ...	Ribo-seq	GTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
59283	99	CTG ...	LQK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
60516	162	CTG ...	LSE ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
1225015	69	ATC ...	IAP ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
57001	123	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1227174	33	AAG ...	KIQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14

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