Transcript 56949 | MetamORF

Transcript

ID CARD

MetamORF ID

56949

ENSMUST00000130187

Name

Mtfr1l-204

Strand

Biotype

retained_intron

Start-end positions

134528385-134535258

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:76824

Aliases

2410166I05Rik,
AI480750, ENSMUSG00000046671, Fam54b,
MGI:1924074, Mtfr1l, NCBI:76824,
OFF:Mtfr1l

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
152389	198	GTG ...	VPN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
156102	93	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
57768	126	CTG ...	LIS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
56948	195	GTG ...	VEV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
57988	42	CTG ...	LKD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
159427	33	CTG ...	LKH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
154948	252	CTG ...	LRH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
155742	99	CTG ...	LHL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
152345	177	TTG ...	LSL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
155857	96	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
155190	45	ATG ...	MTA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
57562	132	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
58810	129	CTG ...	LLI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
150036	30	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
156992	39	CTG ...	LWV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
58225	267	TTG ...	LPC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
151050	33	GTG ...	VPR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
58748	81	CTG ...	LSK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
57399	66	ATG ...	MKE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
150390	51	ATG ...	MPQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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