Transcript 56756 | MetamORF

Transcript

ID CARD

MetamORF ID

56756

ENSMUST00000137448

Name

Alad-203

Strand

Biotype

processed_transcript

Start-end positions

62509169-62519881

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:17025

Aliases

Alad,
ALADH, ENSMUSG00000028393, Lv,
MGI:96853, NCBI:17025, OFF:Alad

Chr 4

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
868804	54	GTG ...	VMS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5
61285	174	CTG ...	LSE ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
868710	54	TTG ...	LSV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
550893	63	ATG ...	MNR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
867478	42	GTG ...	VPT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
59647	210	TTG ...	LCP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
869258	90	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
60845	258	CTG ...	LLR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
867627	168	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
869415	57	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
867582	114	GTG ...	VSG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF
868565	39	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
56755	42	TTG ...	LAE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
60192	129	TTG ...	LAE ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
868186	66	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
60892	255	CTG ...	LRK ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
869057	75	CTG ...	LLR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, v6-5
868908	102	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, v6-5
869034	138	TTG ...	LNP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
868958	87	CTG ...	LSE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
59982	120	GTG ...	VAL ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
1378693	33	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
868916	93	TTG ...	LWH ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
867985	45	CTG ...	LTL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
509799	99	CTG ...	LHS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
868615	51	CTG ...	LQL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, MEF
548169	30	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
56748	78	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
509192	45	CTG ...	LSG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Spleen_B_cell
511098	90	ATG ...	MQL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1653636	57	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
61010	228	GTG ...	VAC ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
868877	144	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1176233	33	CTG ...	LLK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5

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