Transcript 566228

Transcript

ID CARD

MetamORF ID

566228

ENSMUST00000152028

Name

Lrpap1-204

Strand

Biotype

retained_intron

Start-end positions

35102128-35105696

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:16976

Aliases

AA617339,
AI790446, AU042172, C77774,
ENSMUSG00000029103, HBP44, Lrpap1,
MGI:96829, NCBI:16976, OFF:Lrpap1,
RAP

Chr 5

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65983	228	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
64709	261	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
65529	177	CTG ...	LAE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
63744	192	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
905271	273	AGG ...	RVS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
63057	234	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
61900	87	ATG ...	MAA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E
64619	240	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
65649	222	CTG ...	LML ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
65908	183	GTG ...	VRL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
1234724	153	AAG ...	KIQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
63323	231	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, R1E
61424	237	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, R1E
64727	213	GTG ...	VPQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
61451	246	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
901545	276	AAG ...	KRE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1237019	144	AAG ...	KRE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14

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