Transcript 564025

Transcript

ID CARD

MetamORF ID

564025

ENSMUST00000127507

Name

Obsl1-203

Strand

Biotype

retained_intron

Start-end positions

75496337-75503680

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:98733

Aliases

AW822216,
ENSMUSG00000026211, MGI:2138628, NCBI:98733,
Obsl1, OFF:Obsl1

Chr 1

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
664880	294	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
653485	54	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
714886	186	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
27359	270	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
34319	291	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
676468	48	CTG ...	LTI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
720962	147	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
684082	267	GTG ...	VLT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
604524	201	GTG ...	VES ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
696646	150	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
568487	264	CTG ...	LTC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
678136	72	TTG ...	LKK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
659961	60	GTG ...	VNM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
564024	300	GTG ...	VHV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
689642	141	CTG ...	LRY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
598058	294	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
25583	288	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
733804	252	CTG ...	LCR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
680643	96	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
668017	111	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
694412	105	GTG ...	VYP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
23022	228	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
626390	150	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
720787	90	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
712442	153	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
692579	231	GTG ...	VRW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
646943	63	CTG ...	LVG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
19193	279	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
703498	180	CTG ...	LEK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
709014	270	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
684289	39	GTG ...	VQD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
682409	156	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
675623	72	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3

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