Transcript 56360 | MetamORF

Transcript

ID CARD

MetamORF ID

56360

ENSMUST00000130363

Name

Nasp-204

Strand

Biotype

processed_transcript

Start-end positions

116602792-116604925

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:50927

Aliases

5033430J04Rik,
AI131596, AI317140, D4Ertd767e,
ENSMUSG00000028693, Epcs32, MGI:1355328,
Nasp, Nasp-T, NCBI:50927,
OFF:Nasp

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56607	90	TTG ...	LAY ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, Testis
511708	33	ATG ...	MVT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14
1226097	63	AAG ...	KES ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1227605	33	ACG ...	TQR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1225514	36	ATT ...	IRF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1230238	36	ACG ...	TIV ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1148	108	CTG ...	LKE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
1231096	78	AAG ...	KIE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
59042	102	TTG ...	LPK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Testis
1225264	123	ATC ...	ISA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1227769	81	ATA ...	IFG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
59354	180	GTG ...	VEE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Testis
1225088	87	ATT ...	IRE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1229633	42	AAG ...	KLT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
879	99	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, Testis
56359	138	TTG ...	LEA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Testis
1224977	57	AAG ...	KNN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1226570	33	ATC ...	IDV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
58904	153	CTG ...	LQE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, Testis
1080981	30	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14

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