Transcript 56302 | MetamORF

Transcript

ID CARD

MetamORF ID

56302

ENSMUST00000146768

Name

Fbxo42-202

Strand

Biotype

processed_transcript

Start-end positions

141147922-141195212

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:213499

Aliases

6720460I06Rik,
ENSMUSG00000028920, Fbxo42, MGI:1924992,
mKIAA1332, NCBI:213499, OFF:Fbxo42

Chr 4

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1081893	30	GTG ...	VCH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1227340	99	CTG ...	LRQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1377751	51	CTG ...	LDK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
552668	84	ATG ...	MMP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, v6-5
58164	102	GTG ...	VLF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
1229161	156	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
58874	126	CTG ...	LVV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
157722	153	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
149434	300	ATG ...	MFT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
151355	246	GTG ...	VKM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, v6-5
56301	120	GTG ...	VYK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis, v6-5
154919	234	GTG ...	VSW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, v6-5
156042	207	CTG ...	LHW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
823694	81	ATG ...	MPI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, v6-5
551694	63	ATG ...	MSL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
151458	270	GTG ...	VSW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, v6-5
513380	39	ATG ...	MAA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
825278	96	GTG ...	VRA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, v6-5
57514	108	TTG ...	LLV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
552686	54	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1231043	39	ACG ...	TRN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
159571	180	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
549070	57	TTG ...	LVA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
510353	72	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
896322	153	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
150802	240	ATG ...	MTV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, v6-5
150983	123	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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