Transcript 56221 | MetamORF

Transcript

ID CARD

MetamORF ID

56221

ENSMUST00000135644

Name

Hmgcl-203

Strand

Biotype

processed_transcript

Start-end positions

135960332-135962216

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:15356

Aliases

AW476067,
ENSMUSG00000028672, HL, Hmgcl,
MGI:96158, NCBI:15356, OFF:Hmgcl

Chr 4

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56220	99	GTG ...	VNL ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver, Neutrophil, NSC, Testis, v6-5
1428936	96	ATG ...	MFP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
554680	96	GTG ...	VLW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil
511788	138	GTG ...	VDS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil, NSC
512674	93	TTG ...	LWT ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil, NSC, v6-5
509286	147	GTG ...	VSV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil, NSC
60314	153	TTG ...	LAT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, Testis, v6-5
545724	54	ATG ...	MQK ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil
59504	78	TTG ...	LAT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Testis
554253	81	CTG ...	LWQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil
553347	69	TTG ...	LEA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
59805	222	GTG ...	VSV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
60506	138	CTG ...	LVY ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, Liver, Neutrophil, NSC, v6-5
59709	213	GTG ...	VDS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, MEF, Neutrophil, NSC, v6-5
60055	201	GTG ...	VAG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, Neutrophil, NSC, v6-5
545315	42	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
152040	126	GTG ...	VAG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, NSC
60229	126	CTG ...	LNG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, Neutrophil, NSC, Testis, v6-5

Export data