Transcript 55855 | MetamORF

Transcript

ID CARD

MetamORF ID

55855

ENSMUST00000143370

Name

Clic4-202

Strand

Biotype

retained_intron

Start-end positions

135223464-135272814

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:29876

Aliases

Clic4,
D0Jmb3, ENSMUSG00000037242, mc3s5,
MGI:1352754, mtCLIC, NCBI:29876,
OFF:Clic4, TU-74

Chr 4

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
898912	90	ATA ...	IRL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
823618	36	GTG ...	VFS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF
897373	42	ATT ...	ISR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
899551	93	ATT ...	IGN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
896493	195	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
900024	123	ACG ...	TSK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
822060	84	TTG ...	LPN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
55854	51	GTG ...	VMV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
899205	42	ATT ...	IEE ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
56799	108	TTG ...	LAP ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, Testis
57121	51	GTG ...	VNK ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, NSC, Testis
1257	48	CTG ...	LQI ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Testis
898863	81	AGG ...	RNF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
821908	99	CTG ...	LEW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
58550	60	CTG ...	LRP ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Testis
899740	117	AAG ...	KPA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
897408	42	ATC ...	IYR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
899815	183	AAG ...	KHP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
898633	84	AAG ...	KHW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
825675	48	ATG ...	MVK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
826010	72	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
898077	45	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
822805	69	CTG ...	LFC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
896360	150	ATC ...	IFA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
898348	57	ACG ...	TDV ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC

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