Transcript 5572 | MetamORF

Transcript

ID CARD

MetamORF ID

5572

ENSMUST00000212984

Name

Nup93-208

Strand

Biotype

processed_transcript

Start-end positions

94296007-94303759

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:71805

Aliases

2410008G02Rik,
ENSMUSG00000032939, MGI:1919055, NCBI:71805,
Nup93, OFF:Nup93

Chr 8

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
80774	99	GTG ...	VLT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell, Testis
80679	51	GTG ...	VRM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Spleen_B_cell, Testis
1265031	72	AAG ...	KSR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
80984	123	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1327169	165	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
606890	141	CTG ...	LCL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
79061	96	CTG ...	LTP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell, Testis
80965	156	GTG ...	VTV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
79721	129	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
5571	33	TTG ...	LVP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
81921	75	CTG ...	LKS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Spleen_B_cell, Testis
81439	57	GTG ...	VEV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
82267	102	GTG ...	VVL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell, Testis
81622	96	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1263829	33	AAG ...	KQA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
603447	144	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
78814	138	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
78379	114	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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