Transcript 55710 | MetamORF

Transcript

ID CARD

MetamORF ID

55710

ENSMUST00000050078

Name

Sdf4-201

Strand

Biotype

protein_coding

Start-end positions

155992911-156013610

CDS Start-stop positions

155996196-156009950

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:20318

Aliases

Cab45,
ENSMUSG00000029076, MGI:108079, NCBI:20318,
OFF:Sdf4, Sdf4

Chr 4

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
57622	93	GTG ...	VIS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
151884	156	CTG ...	LMR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
55950	135	CTG ...	LAR ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, R1E, Spleen_B_cell, Testis
59386	123	CTG ...	LLP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E, Spleen_B_cell, Testis
58926	48	ATG ...	MGL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
56048	108	GTG ...	VGG ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Spleen_B_cell, Testis
57737	141	TTG ...	LVA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E, Spleen_B_cell, Testis
55709	60	TTG ...	LGT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell, Testis
149294	36	ATG ...	MNT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
57728	30	CTG ...	LGE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
150132	153	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
162069	240	GTG ...	VFF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
149750	63	CTG ...	LVT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, Brain
56718	39	TTG ...	LKD ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E, Testis
56075	75	CTG ...	LPT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
151041	39	CTG ...	LLM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
145507	165	TTG ...	LPL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
160582	102	CTG ...	LAG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
153949	159	TTG ...	LLM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
58733	45	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
57877	162	CTG ...	LEG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Testis
159284	81	CTG ...	LDY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
58057	84	GTG ...	VAG ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, R1E, Spleen_B_cell, Testis
150211	33	ATG ...	MAS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
151080	42	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
56216	54	CTG ...	LWV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
57341	90	ATG ...	MQP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
55981	183	CTG ...	LRD ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Spleen_B_cell, Testis
57160	42	TTG ...	LMK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
57063	96	ATG ...	MVI ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Testis
57440	42	TTG ...	LRT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
57105	102	ATG ...	MAA ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver, Testis
154744	66	CTG ...	LWS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
164815	174	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
149339	33	CTG ...	LRD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
59400	57	CTG ...	LIS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, R1E, Testis
56975	45	TTG ...	LSY ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver, Testis
160698	105	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
58199	39	ATG ...	MKT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell, Testis
59336	45	ATG ...	MVS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell, Testis
58312	102	ATG ...	MDT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
164172	162	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain

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