Transcript 55675 | MetamORF

Transcript

ID CARD

MetamORF ID

55675

ENSMUST00000130503

Name

Smu1-202

Strand

Biotype

processed_transcript

Start-end positions

40743584-40757883

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:74255

Aliases

2600001O03Rik,
2610203K23Rik, AB044414, AI845086,
AW556129, Bwd, ENSMUSG00000028409,
MGI:1915546, NCBI:74255, OFF:Smu1,
Smu1

Chr 4

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56589	111	GTG ...	VAD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
58725	117	CTG ...	LRQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
1232277	243	AAG ...	KYQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
509644	150	TTG ...	LIL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
58098	51	TTG ...	LPD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
57136	54	TTG ...	LMD ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
57432	105	TTG ...	LRR ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
59358	174	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
58232	132	GTG ...	VDS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
693	42	TTG ...	LRC ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, NSC, Testis, v6-5
511836	57	CTG ...	LGK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, NSC, Spleen_B_cell, v6-5
58335	99	GTG ...	VLG ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
57756	147	CTG ...	LKY ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
552007	33	ATG ...	MWK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
164354	84	ATG ...	MVS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1228634	126	AAG ...	KIQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
57408	138	TTG ...	LFR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Testis
58333	51	ATG ...	MDL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
56575	111	CTG ...	LVT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, Testis
58472	57	CTG ...	LLM ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
550688	42	CTG ...	LSK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14
511315	48	ATG ...	MML ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
56657	81	CTG ...	LWT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
59117	81	ATG ...	MVS ...	Ribo-seq	ATG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1225359	30	AGG ...	REN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
58530	156	TTG ...	LIE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
59119	63	CTG ...	LAL ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
60237	246	CTG ...	LKY ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
55674	165	TTG ...	LLP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Neutrophil, NSC, Testis
57580	57	CTG ...	LEN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Testis
58731	60	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
154141	60	TTG ...	LGY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1326	57	TTG ...	LMD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
509584	120	GTG ...	VAA ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
898518	63	ATT ...	ICF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
57833	138	TTG ...	LGA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
516350	60	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
56778	54	CTG ...	LIL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
57237	147	GTG ...	VEC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, Testis, v6-5
1229146	102	ATT ...	IAS ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
155935	45	GTG ...	VEL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
59450	63	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Testis
55829	123	TTG ...	LDR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
544422	39	TTG ...	LED ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
553009	51	GTG ...	VCS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
56059	162	TTG ...	LEL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
1226801	144	AAG ...	KYQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1229097	144	ATC ...	IDL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
57510	225	GTG ...	VIR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Testis
56687	141	CTG ...	LNT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
57888	189	TTG ...	LKW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Neutrophil, Testis
1230387	51	AAG ...	KSA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
57980	201	TTG ...	LKE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis
59183	78	GTG ...	VWN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
513405	51	CTG ...	LSK ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
1230660	90	AGG ...	RAH ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14

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