Transcript 55662 | MetamORF

Transcript

ID CARD

MetamORF ID

55662

ENSMUST00000134492

Name

Tprgl-204

Strand

Biotype

processed_transcript

Start-end positions

154158140-154160666

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:67808

Aliases

1200015A19Rik,
ENSMUSG00000029030, MGI:1915058, mover,
NCBI:67808, OFF:Tprgl, Svap30,
Tprg1l, Tprgl

Chr 4

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
58357	72	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1428278	75	GTG ...	VGL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
153832	180	GTG ...	VDH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
154387	174	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
57694	150	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
152574	153	CTG ...	LNV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
1429262	174	CTG ...	LIQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
1426791	195	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
60674	201	GTG ...	VDH ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
55661	45	GTG ...	VED ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
60959	165	CTG ...	LVT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
61185	282	GTG ...	VPA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
58771	105	GTG ...	VFR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
515790	102	GTG ...	VVR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
156614	225	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1429941	105	CTG ...	LER ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
56612	126	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
60744	171	CTG ...	LVL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
160293	228	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
56152	81	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
897974	270	CTG ...	LRD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
1015994	111	CTG ...	LVL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver
1016747	135	CTG ...	LPG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver
1017148	114	GTG ...	VLV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver
56667	147	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
60715	168	GTG ...	VLV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
509761	147	CTG ...	LPV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1429841	258	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
61132	243	GTG ...	VED ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
60900	147	CTG ...	LLI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Testis
59945	234	CTG ...	LWR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
413937	261	ACG ...	TVD ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12
60333	255	GTG ...	VVR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
1427767	276	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
57023	57	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
157757	141	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1016556	108	GTG ...	VLE ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver
58247	144	CTG ...	LVT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
146642	162	TTG ...	LWP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
61191	93	GTG ...	VAL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Spleen_B_cell, Testis

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