Transcript 556055

Transcript

ID CARD

MetamORF ID

556055

ENSMUST00000137391

Name

Yipf1-206

Strand

Biotype

processed_transcript

Start-end positions

107343111-107351589

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

NCBI:230584

Aliases

C030002N13Rik,
ENSMUSG00000057375, MGI:1915532, NCBI:230584,
OFF:Yipf1, Yipf1

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
156236	141	CTG ...	LGV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E, v6-5
556658	201	GTG ...	VLV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
1177631	75	TTG ...	LGP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
556270	219	CTG ...	LGV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
1178619	102	GTG ...	VDH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
151173	69	TTG ...	LAT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
556715	147	TTG ...	LAT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
161066	45	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
557941	126	GTG ...	VLL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
509814	120	TTG ...	LVM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
557574	270	CTG ...	LWI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
556071	135	GTG ...	VTI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
557343	123	TTG ...	LLH ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
556054	111	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
155840	57	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
151471	48	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
514167	192	CTG ...	LWI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E, v6-5
558710	198	TTG ...	LVM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, v6-5
558205	114	GTG ...	VLL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, Neutrophil, R1E, v6-5
510649	123	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5

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