Transcript 55599 | MetamORF

Transcript

ID CARD

MetamORF ID

55599

ENSMUST00000150784

Name

Nrd1-210

Strand

Biotype

processed_transcript

Start-end positions

109040202-109061475

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:230598

Aliases

2600011I06Rik,
AI875733, ENSMUSG00000053510, MGI:1201386,
NCBI:230598, NRD-C, Nrd1,
Nrdc, OFF:Nrd1

Chr 4

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
898229	33	ATA ...	IMN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
55639	54	CTG ...	LKK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, Testis
58395	87	CTG ...	LAE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1229944	60	GTG ...	VLM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
58757	72	CTG ...	LNK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Testis
823375	33	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
898966	66	ATT ...	ITD ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
57786	102	GTG ...	VAQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
57298	162	CTG ...	LEY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
57406	129	GTG ...	VQF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
57456	177	GTG ...	VRL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
56083	117	GTG ...	VVE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
56768	171	CTG ...	LEE ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis, v6-5
58802	90	CTG ...	LCK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, Testis
60567	252	CTG ...	LVS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
56516	105	CTG ...	LTE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Testis
1377608	105	TTG ...	LIA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1377389	96	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
55598	93	CTG ...	LEY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
59423	39	CTG ...	LIS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Testis, v6-5
58253	108	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1684792	42	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
159589	39	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1684663	54	ATG ...	MRE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
57700	132	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Testis
1377857	81	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
56143	105	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
59072	162	CTG ...	LNF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1555992	48	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1377184	90	CTG ...	LNT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
61004	276	CTG ...	LKS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
545711	42	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1378597	72	TTG ...	LSI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
900095	132	ACG ...	TDF ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
58123	81	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
897081	51	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
58035	114	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
56674	150	GTG ...	VNI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
896963	33	ATC ...	ISF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1684563	63	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
56803	45	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
899309	120	TTG ...	LKA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver
58922	147	CTG ...	LER ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
897840	144	ATT ...	ILT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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