Transcript 55577 | MetamORF

Transcript

ID CARD

MetamORF ID

55577

ENSMUST00000107214

Name

Psip1-202

Strand

Biotype

protein_coding

Start-end positions

83461871-83486453

CDS Start-stop positions

83462541-83485788

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:101739

Aliases

AA408851,
AU015605, Dfs70, ENSMUSG00000028484,
Ledgfa, Ledgfb, MGI:2142116,
NCBI:101739, OFF:Psip1, Psip1,
Psip2

Chr 4

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59040	63	CTG ...	LEI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
60591	78	TTG ...	LKW ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, R1E, Testis, v6-5
57279	90	ATG ...	MHR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
58201	81	CTG ...	LML ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
57268	126	CTG ...	LLP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, MEF, R1E, v6-5
61103	84	CTG ...	LML ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
145745	33	GTG ...	VAV ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, R1E, Spleen_B_cell, v6-5
60746	36	CTG ...	LIR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
60066	171	GTG ...	VTW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Testis
59340	75	TTG ...	LKW ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
56714	33	CTG ...	LIR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, R1E, Testis, v6-5
55576	156	ATG ...	MKI ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Testis
60529	81	ATG ...	MLK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
57820	156	GTG ...	VLS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, MEF, R1E, v6-5
61306	90	CTG ...	LIQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
56226	108	TTG ...	LGL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, MEF, R1E
61059	93	ATG ...	MHR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
56374	42	CTG ...	LIQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
57982	159	TTG ...	LMK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Testis
58448	78	ATG ...	MLK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
58329	30	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
158597	48	GTG ...	VEH ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	Brain, MEF, R1E, Spleen_B_cell, v6-5
56006	114	CTG ...	LVL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, MEF, R1E
59123	141	CTG ...	LIA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF, R1E, v6-5
513741	39	GTG ...	VAV ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Spleen_B_cell

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